[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 125 items for (author: tsutsumi & a)

EMDB-36048:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36049:
Cryo-EM structure of hZnT7-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36050:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in heterogeneous conformations- one subunit in an inward-facing and the other in an outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36051:
Cryo-EM structure of hZnT7-Fab complex in zinc state 2, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-bound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36052:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36053:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36055:
Cryo-EM structure of hZnT7-Fab complex in zinc state 1, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-unbound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7t:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7u:
Cryo-EM structure of hZnT7-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7v:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in heterogeneous conformations- one subunit in an inward-facing and the other in an outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7w:
Cryo-EM structure of hZnT7-Fab complex in zinc state 2, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-bound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7x:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7y:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j80:
Cryo-EM structure of hZnT7-Fab complex in zinc state 1, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-unbound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-29644:
Structure of signaling thrombopoietin-MPL receptor complex
Method: single particle / : Tsutsumi N, Jude KM, Gati C, Garcia KC

PDB-8g04:
Structure of signaling thrombopoietin-MPL receptor complex
Method: single particle / : Tsutsumi N, Jude KM, Gati C, Garcia KC

EMDB-29523:
GC-C-Hsp90-Cdc37 regulatory complex
Method: single particle / : Caveney NA, Garcia KC

PDB-8fx4:
GC-C-Hsp90-Cdc37 regulatory complex
Method: single particle / : Caveney NA, Garcia KC

EMDB-26989:
Extracellular architecture of an engineered canonical Wnt signaling ternary complex
Method: single particle / : Tsutsumi N, Jude KM, Garcia KC

PDB-8ctg:
Extracellular architecture of an engineered canonical Wnt signaling ternary complex
Method: single particle / : Tsutsumi N, Jude KM, Garcia KC

EMDB-28649:
Structure of Janus Kinase (JAK) dimer complexed with cytokine receptor intracellular domain
Method: single particle / : Caveney NA, Saxton RA, Waghray D, Garcia KC

PDB-8ewy:
Structure of Janus Kinase (JAK) dimer complexed with cytokine receptor intracellular domain
Method: single particle / : Caveney NA, Saxton RA, Waghray D, Garcia KC

EMDB-32019:
Cryo-EM structure of SAM-Tom40 intermediate complex
Method: single particle / : Takeda H, Tsutsumi A, Kikkawa M, Endo T

PDB-7vku:
Cryo-EM structure of SAM-Tom40 intermediate complex
Method: single particle / : Takeda H, Tsutsumi A, Kikkawa M, Endo T

EMDB-32347:
The E1-BeF3- 2Ca2+ of SERCA2b
Method: single particle / : Zhang Y, Watanabe S, Tsutsumi A, Inaba K

EMDB-32348:
The 'Ca2+-unbound' BeF3- of SERCA2b
Method: single particle / : Zhang Y, Watanabe S, Tsutsumi A, Inaba K

EMDB-32349:
'late' E2P of SERCA2b
Method: single particle / : Zhang Y, Watanabe S, Tsutsumi A, Inaba K

EMDB-32350:
E2 Pi of SERCA2b
Method: single particle / : Zhang Y, Watanabe S, Tsutsumi A, Inaba K

PDB-7w7t:
The E1-BeF3- 2Ca2+ of SERCA2b
Method: single particle / : Zhang Y, Watanabe S, Tsutsumi A, Inaba K

PDB-7w7u:
The 'Ca2+-unbound' BeF3- of SERCA2b
Method: single particle / : Zhang Y, Watanabe S, Tsutsumi A, Inaba K

PDB-7w7v:
'late' E2P of SERCA2b
Method: single particle / : Zhang Y, Watanabe S, Tsutsumi A, Inaba K

PDB-7w7w:
E2 Pi of SERCA2b
Method: single particle / : Zhang Y, Watanabe S, Tsutsumi A, Inaba K

EMDB-32036:
Structure of recombinant RyR2 mutant K4593A (EGTA dataset)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

EMDB-33935:
Structure of recombinant RyR2 (EGTA dataset, class 1&2, closed state)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

EMDB-33936:
Structure of recombinant RyR2 (EGTA dataset, class 1, closed state)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

EMDB-33937:
Structure of recombinant RyR2 (EGTA dataset, class 2, closed state)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

EMDB-33938:
Structure of recombinant RyR2 (Ca2+ dataset, class 1, open state)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

EMDB-33939:
Structure of recombinant RyR2 (Ca2+ dataset, class 2, open state)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

EMDB-33940:
Structure of recombinant RyR2 (Ca2+ dataset, class 3, open state)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

PDB-7vml:
Structure of recombinant RyR2 (EGTA dataset, class 1&2, closed state)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

PDB-7vmm:
Structure of recombinant RyR2 (EGTA dataset, class 1, closed state)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

PDB-7vmn:
Structure of recombinant RyR2 (EGTA dataset, class 2, closed state)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

PDB-7vmo:
Structure of recombinant RyR2 (Ca2+ dataset, class 1, open state)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

PDB-7vmp:
Structure of recombinant RyR2 (Ca2+ dataset, class 2, open state)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

PDB-7vmr:
Structure of recombinant RyR2 mutant K4593A (EGTA dataset)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

EMDB-32037:
Structure of recombinant RyR2 mutant K4593A (Ca2+ dataset)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

PDB-7vmq:
Structure of recombinant RyR2 (Ca2+ dataset, class 3, open state)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

PDB-7vms:
Structure of recombinant RyR2 mutant K4593A (Ca2+ dataset)
Method: single particle / : Kobayashi T, Tsutsumi A, Kurebayashi N, Kodama M, Kikkawa M, Murayama T, Ogawa H

EMDB-26833:
Structure of the homodimeric IL-25-IL-17RB binary complex
Method: single particle / : Wilson SC, Caveney NA, Jude KM, Garcia KC

EMDB-26834:
Structure of the higher-order IL-25-IL-17RB complex
Method: single particle / : Wilson SC, Caveney NA, Jude KM, Garcia KC

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more